The Cathedral Museum of Cebu is a museum in Downtown Cebu City in the Philippines, opened in November 2006. It is the ecclesiastical museum of the Roman Catholic Archdiocese of Cebu.

The University of San Carlos Museum is the history museum of the University of San Carlos, located in Cebu City, the Philippines.

Museo Sugbo is the Cebu Provincial Museum located in the former Cebu Provincial Detention and Rehabilitation Center, four blocks from Plaza Independencia.

The Basilica del Santo Nino Museum was first opened to the public in 1965, for the 4th centenary of the Christianization of the Philippines of which the shrine was the center of festivities.

Jumalon Museum, Butterfly Sanctuary and Art Gallery is a private museum, art gallery and nature reserve run by the Jumalon Foundation. It is located in Julian N. Jumalon St. Basak, Pardo, Cebu City, Philippines.